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GST refund · RFD-01 · 2026

GST Refund Stuck, Rejected or Showing a Mismatch? A Pre-RFD-01 Reconciliation Checklist

If a GST refund is stuck or showing a mismatch, first identify the refund category and the exact portal stage: draft RFD-01, filed application, RFD-03 deficiency memo, RFD-08 notice or RFD-06 order. Reconcile the claim period to GSTR-1, GSTR-3B, GSTR-2B/eligible ITC and supporting export/inverted-duty records before refiling or replying. Do not promise approval or a fixed processing time.

By: TargoLegal Research and Editorial DeskUpdated: 18 August 2026Last legally reviewed: 18 August 2026
GST Refund Stuck, Rejected or Showing a Mismatch? A Pre-RFD-01 Reconciliation ChecklistUse this map to decide what should be checked before action.
GST 2026
TypeExport / inverted / other
CLAIM
StageRFD-01 / 03 / 08 / 06
STATUS
ReconcileReturns ↔ ITC ↔ evidence
MATCH
ActionRefill / reply / appeal review
NEXT
The business should receive a clear pending-item list, proposed treatment and filing/response evidence—not just a message saying “done”.
Refund type controls the evidenceExport without tax, export with tax, inverted duty and other claims use different calculations/documents.
RFD-03 is a deficiency memoGST Portal guidance says a fresh application may be needed after deficiencies are rectified.
RFD-08 requires a reasoned replyPortal uses RFD-09 for taxpayer reply.
Return reconciliation should precede RFD-01Claim figures should be traceable to filed returns and source documents.
Quick answer

If a GST refund is stuck or showing a mismatch, first identify the refund category and the exact portal stage: draft RFD-01, filed application, RFD-03 deficiency memo, RFD-08 notice or RFD-06 order. Reconcile the claim period to GSTR-1, GSTR-3B, GSTR-2B/eligible ITC and supporting export/inverted-duty records before refiling or replying. Do not promise approval or a fixed processing time.

The phrase ‘refund stuck’ is too broad

A bank-validation problem, deficiency memo, mismatch warning and rejection order need different actions.

Businesses with refund applications or pre-filing mismatch

Exporters, SEZ suppliers and inverted-duty claimants are common examples.

Claim data, return data and documents do not reconcile

Invoice periods, export turnover, ITC, bank validation and missing statements are frequent causes.

Practical workflow
1
Check source recordsKeep evidence and ownership for this step.
2
Reconcile portal dataKeep evidence and ownership for this step.
3
Classify differencesKeep evidence and ownership for this step.
4
Approve next actionKeep evidence and ownership for this step.

Refund type + ARN + status + notice

Download the filed RFD-01, acknowledgements/notices/orders, return data and supporting statements for the exact claim period.

Portal documentMeaningWhat to do
RFD-01Refund applicationReconcile before submission
RFD-02AcknowledgementTrack processing
RFD-03Deficiency memoRectify and generally file fresh application as portal guidance requires
RFD-08SCNPrepare RFD-09 reply with evidence
RFD-06Sanction/rejection orderReview order and available remedy

Pre-RFD-01 checklist

Reconcile eligibility, turnover, tax/ITC, excluded credits, invoices, export evidence, bank account, declarations and portal validations before filing.

RFD-01 claim exceeds eligible return data

An exporter claims based on books, but one export invoice was amended in a later GSTR-1 and several purchase credits are absent from the relevant 2B. The refund working must bridge those differences.

Repeated refiling without fixing data repeats the same deficiency

It also increases the chance of inconsistent explanations across applications.

We identify the portal stage before touching the claim

Review covers refund type, period, ARN, GSTR-1, 3B, 2B, eligible ITC, invoices, export/supporting evidence, bank validation and every RFD notice/order.

What TargoLegal would ask for before filing or responding

The exact pack changes by issue, but these controls prevent the most common hand-off and accountability failures.

GSTIN and exact tax period
Filed return / draft return status
Books or source registers
GSTR-2B / IMS where relevant
Electronic ledgers and challans
Notices / portal screenshots if any
Reconciliation difference and proposed treatment
Client approval before filing or response
Filed PDF / ARN retained after submission
Client approval matters

The proposed filing, payment, reversal, correction or response should be explained before submission. After filing, retain the ARN/filed PDF and any acknowledgement.

Do not make the problem harder to unwind

Acting from a portal total alone

Reconcile books and source evidence before deciding tax treatment.

Mixing different tax periods

Use the exact period that created the mismatch, notice or filing obligation.

Making a blind adjustment next month

A correction should have a written bridge to the original error.

Not keeping filing evidence

Save return PDFs, ARN, challans and the approved working.

What to send for a first review

Refund stuck? Send the refund type, tax period, ARN and the latest notice/error screenshot. The portal stage can then be identified before any refiling or response.

What should I send first?

Send the GSTIN, exact tax period and the document or mismatch that triggered the question. That usually determines the rest of the checklist.

Should I pay before reconciling?

Do not make a blind payment merely because a portal difference appears. Establish the legal and factual basis first, unless an undisputed liability is already clear.

Can the GST Portal data be wrong or incomplete?

Portal data is essential evidence but it still has to be reconciled with books, supplier/customer records and the applicable law.

What should I keep after filing?

Retain the filed return PDF, ARN, payment evidence, reconciliation working and any client-approved summary of adjustments.

When should I involve a GST professional?

Professional review is advisable where the issue affects material tax, ITC, notices, refund, registration status, exports, e-invoicing or multiple return periods.

Official sources used

Legal and portal claims on this page were anchored to the official sources below. Secondary discussions are not used as legal authority.

Editorial review record

TargoLegal Research and Editorial Desk · Last legally reviewed: 18 August 2026. GST Portal workflows, notifications and due-date extensions should be rechecked immediately before action.

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